| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3512 | 33527 | G | T | 247 | 188.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 57356 | C | G | 18 | 224.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 67708 | A | C | 13 | 55.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 68284 | G | C | 85 | 2089.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 68344 | T | A | 88 | 575.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3521 | 48973 | T | A | 10 | 33.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3521 | 65228 | T | A | 35 | 882.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3522 | 69427 | A | T | 39 | 1290.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3522 | 69428 | G | T | 42 | 1384.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3522 | 69493 | A | T | 244 | 5407.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3529 | 15492 | G | C | 25 | 70.77 | exon | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3529 | 15557 | C | A | 11 | 194.77 | exon | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3532 | 49541 | G | T | 250 | 9109.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3533 | 16185 | C | G | 250 | 230.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3533 | 16186 | A | C | 250 | 227.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3533 | 16187 | G | T | 248 | 325.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3536 | 34071 | G | T | 12 | 41.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3544 | 66425 | A | C | 10 | 66.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3545 | 22182 | G | C | 68 | 102.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3551 | 3983 | C | G | 38 | 34.77 | noncoding | Transversion | 0/1 | Unannotated |