| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3555 | 369 | A | C | 17 | 49.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3555 | 370 | G | T | 18 | 49.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3555 | 469 | C | A | 15 | 49.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3555 | 470 | C | G | 14 | 55.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3556 | 4722 | C | A | 19 | 311.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3556 | 4723 | A | C | 36 | 886.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3556 | 4925 | G | C | 250 | 8670.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3556 | 4986 | A | C | 219 | 7516.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3556 | 7086 | T | A | 21 | 37.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3556 | 7087 | G | T | 21 | 37.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3559 | 42371 | T | A | 25 | 445.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3559 | 43066 | G | C | 11 | 64.77 | intron | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3559 | 43112 | T | G | 27 | 31.77 | intron | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3559 | 43124 | C | A | 29 | 36.77 | intron | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3559 | 43201 | G | C | 18 | 418.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3559 | 43414 | G | T | 20 | 106.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3559 | 43429 | T | A | 19 | 57.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3559 | 43493 | T | A | 29 | 31.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3559 | 43654 | T | G | 33 | 185.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3562 | 1047 | C | G | 12 | 66.77 | exon | Transversion | 0/1 | Unannotated |