| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3673 | 6577 | G | C | 20 | 222.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 7181 | C | A | 11 | 227.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 9008 | C | G | 14 | 73.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 9011 | T | A | 14 | 73.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 10347 | G | C | 56 | 204.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 10383 | A | T | 45 | 206.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3674 | 3960 | A | T | 54 | 1061.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3681 | 19122 | C | A | 17 | 52.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3684 | 32430 | G | T | 32 | 854.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3684 | 32469 | C | A | 20 | 486.89 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3684 | 32528 | C | A | 40 | 1211.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3684 | 32529 | T | A | 39 | 1212.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3686 | 44925 | C | G | 12 | 97.77 | noncoding | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3689 | 2395 | T | G | 27 | 40.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3692 | 48109 | A | T | 25 | 83.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3692 | 48182 | G | C | 11 | 349.56 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3697 | 43475 | G | T | 24 | 133.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3697 | 43476 | G | C | 39 | 47.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3704 | 21835 | A | T | 10 | 33.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3707 | 10732 | T | G | 153 | 5544.77 | noncoding | Transversion | 1/1 | Unannotated |