| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3707 | 64383 | A | C | 17 | 46.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3708 | 21008 | C | G | 11 | 144.77 | intron | Transversion | 0/1 | Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) (SoFdGOGAT) |
| Scaffold_3708 | 22862 | A | T | 12 | 268.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 22907 | T | G | 29 | 435.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 22908 | G | T | 29 | 33.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3711 | 45346 | A | T | 92 | 725.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3711 | 45645 | A | C | 31 | 37.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3711 | 45925 | C | A | 205 | 102.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3711 | 46090 | A | T | 250 | 1825.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3723 | 50967 | G | C | 22 | 270.77 | noncoding | Transversion | 0/1 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_3724 | 68734 | T | A | 42 | 757.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3724 | 69573 | A | T | 50 | 117.77 | CDS | Transversion | 0/1 | Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2) |
| Scaffold_3724 | 69734 | G | T | 16 | 191.77 | CDS | Transversion | 0/1 | Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2) |
| Scaffold_3725 | 36601 | T | A | 37 | 59.77 | exon | Transversion | 0/1 | Glycosyltransferase family 92 protein RCOM_0530710 (EC 2.4.1.-) |
| Scaffold_3725 | 37015 | C | G | 73 | 409.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3725 | 37017 | G | T | 135 | 1818.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3725 | 55440 | T | A | 19 | 94.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3726 | 22672 | T | G | 250 | 103.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3726 | 22687 | T | G | 249 | 2706.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3726 | 22690 | T | G | 249 | 2042.77 | noncoding | Transversion | 0/1 | Unannotated |