| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3731 | 29819 | A | C | 250 | 1384.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3733 | 43783 | A | C | 16 | 42.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3733 | 43807 | G | T | 24 | 357.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3733 | 43924 | G | C | 29 | 564.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3733 | 44026 | A | C | 44 | 60.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3733 | 44225 | T | A | 25 | 621.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3740 | 42071 | G | T | 15 | 257.8 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3742 | 15329 | A | C | 53 | 909.77 | noncoding | Transversion | 0/1 | Protein TIC 214 (Translocon at the inner envelope membrane of chloroplasts 214) (AtTIC214) |
| Scaffold_3749 | 5287 | A | T | 12 | 302.77 | noncoding | Transversion | 0/1 | Protein Ycf2 |
| Scaffold_3752 | 4730 | T | A | 17 | 144.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3752 | 6995 | C | G | 22 | 455.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3755 | 4554 | A | T | 93 | 1465.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3757 | 22916 | A | T | 15 | 341.89 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3757 | 22918 | A | C | 136 | 4583.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3757 | 23298 | G | T | 246 | 123.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3763 | 3580 | C | G | 250 | 6028.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3763 | 3709 | C | G | 141 | 1029.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3767 | 50578 | A | C | 245 | 31.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3767 | 50581 | A | C | 249 | 108.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3770 | 57233 | A | T | 31 | 290.77 | noncoding | Transversion | 0/1 | Unannotated |