| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_13 | 3419538 | A | C | 14 | 123.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 3497423 | T | G | 18 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 3503122 | A | T | 46 | 244.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 3505455 | T | A | 11 | 64.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 3508393 | G | C | 53 | 149.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 3509879 | A | C | 95 | 255.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_14 | 96177 | A | C | 13 | 61.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_14 | 276626 | T | A | 12 | 252.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_14 | 487871 | A | T | 18 | 43.77 | CDS | Transversion | 0/1 | Violaxanthin de-epoxidase, chloroplastic (EC 1.23.5.1) |
| Scaffold_14 | 586970 | T | G | 21 | 425.31 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_14 | 690175 | A | T | 12 | 98.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_14 | 724748 | C | A | 246 | 6786.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_14 | 1356309 | A | C | 11 | 172.78 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_14 | 1818626 | C | A | 14 | 49.77 | CDS | Transversion | 0/1 | Eukaryotic initiation factor 4A-8 (eIF-4A-8) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-8) |
| Scaffold_14 | 1838567 | A | T | 15 | 55.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_14 | 1940908 | A | T | 17 | 309.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_14 | 1996722 | G | C | 22 | 102.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_14 | 1997938 | A | C | 15 | 43.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_14 | 2003071 | G | T | 154 | 1010.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_14 | 2096752 | A | T | 10 | 317.78 | intron | Transversion | 1/1 | Unannotated |