| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3856 | 81364 | C | A | 17 | 60.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3858 | 104 | T | A | 53 | 285.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3858 | 23883 | C | A | 11 | 169.9 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3860 | 41243 | G | T | 22 | 31.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3860 | 41343 | C | A | 10 | 58.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3860 | 52664 | A | T | 39 | 53.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3860 | 52764 | C | A | 76 | 45.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3866 | 60092 | C | A | 250 | 230.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3872 | 29793 | C | A | 39 | 39.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3872 | 29794 | A | T | 44 | 403.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3872 | 29795 | G | T | 66 | 813.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3873 | 48071 | T | A | 18 | 137.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3877 | 40047 | T | A | 240 | 1692.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3877 | 40159 | T | G | 100 | 80.77 | exon | Transversion | 0/1 | Uncharacterized protein ycf68 (ORF 134) |
| Scaffold_3878 | 32176 | A | C | 174 | 158.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3888 | 5503 | A | C | 14 | 92.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3888 | 19949 | G | T | 44 | 401.88 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3888 | 47864 | A | C | 250 | 9100.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3888 | 47870 | A | T | 250 | 164.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3890 | 27284 | T | G | 18 | 237.77 | intron | Transversion | 0/1 | Unannotated |