| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3893 | 3773 | G | T | 23 | 227.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3894 | 33762 | T | A | 55 | 859.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3895 | 55632 | C | A | 23 | 420.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3900 | 7588 | C | G | 164 | 31.78 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3901 | 27195 | G | C | 21 | 525.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3903 | 18716 | T | A | 238 | 9133.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3905 | 44939 | G | T | 28 | 152.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3905 | 45221 | A | C | 137 | 1874.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3906 | 16574 | A | C | 247 | 184.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3910 | 30936 | T | A | 79 | 42.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3913 | 5510 | C | G | 48 | 1204.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3915 | 20955 | T | A | 11 | 61.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3915 | 20958 | A | T | 14 | 49.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3918 | 29208 | T | A | 30 | 39.77 | noncoding | Transversion | 0/1 | NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit 1) (NDH subunit 1) (NADH-plastoquinone oxidoreductase subunit 1) |
| Scaffold_3919 | 56834 | A | C | 212 | 180.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3920 | 4576 | T | A | 250 | 260.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3922 | 19832 | C | G | 10 | 141.84 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3922 | 19833 | C | A | 17 | 291.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3922 | 20373 | A | C | 54 | 289.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3928 | 29700 | C | G | 18 | 52.77 | noncoding | Transversion | 0/1 | Unannotated |