| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_4 | 688832 | A | G | 20 | 40.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_4 | 858777 | C | T | 10 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_4 | 871704 | T | C | 250 | 8970.77 | exon | Transition | 1/1 | Unannotated |
| Scaffold_4 | 923823 | G | A | 22 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_4 | 947117 | T | C | 15 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_4 | 1105082 | A | G | 10 | 70.77 | exon | Transition | 0/1 | Transcription factor GTE4 (Bromodomain-containing protein GTE4) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E4) |
| Scaffold_4 | 1402940 | A | G | 78 | 1355.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_4 | 1777960 | A | G | 11 | 67.77 | exon | Transition | 0/1 | Galactan beta-1,4-galactosyltransferase GALS3 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 3) |
| Scaffold_4 | 2019398 | C | T | 19 | 283.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_4 | 2291954 | A | G | 10 | 30.77 | CDS | Transition | 0/1 | Linoleate 9S-lipoxygenase 6 (EC 1.13.11.58) (Lipoxygenase 1-5) (StLOX1) (lox1:St:3) (Fragment) |
| Scaffold_5 | 178401 | C | T | 19 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 395466 | T | C | 206 | 1442.77 | CDS | Transition | 0/1 | 40S ribosomal protein S10-3 |
| Scaffold_5 | 395469 | C | T | 211 | 1475.77 | CDS | Transition | 0/1 | 40S ribosomal protein S10-3 |
| Scaffold_5 | 395535 | T | C | 192 | 4535.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 395541 | C | T | 123 | 2402.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 505206 | T | C | 11 | 61.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 763320 | T | C | 250 | 8974.77 | CDS | Transition | 1/1 | Unannotated |
| Scaffold_5 | 909987 | G | A | 174 | 124.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_5 | 915268 | A | G | 117 | 2618.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 915271 | G | A | 140 | 2858.77 | CDS | Transition | 0/1 | Unannotated |