| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_5 | 915475 | G | A | 239 | 6776.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 916699 | A | G | 250 | 810.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 916759 | T | C | 250 | 6442.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 968860 | C | T | 22 | 40.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1267854 | A | G | 12 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1713647 | C | T | 11 | 39.77 | CDS | Transition | 0/1 | Serine/threonine-protein kinase VPS15 (EC 2.7.11.1) (Vacuolar protein sorting-associated protein 15) (AtVPS15) |
| Scaffold_5 | 1715492 | C | T | 20 | 43.77 | CDS | Transition | 0/1 | Serine/threonine-protein kinase VPS15 (EC 2.7.11.1) (Vacuolar protein sorting-associated protein 15) (AtVPS15) |
| Scaffold_6 | 145564 | A | G | 20 | 68.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_6 | 174669 | A | C,T | 92 | 3376.77 | noncoding | Transition | 1/2 | Unannotated |
| Scaffold_6 | 174673 | A | G | 250 | 351.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_6 | 174674 | T | C | 249 | 299.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_6 | 174687 | T | C | 249 | 63.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_6 | 174705 | T | C | 249 | 511.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_6 | 174708 | A | G | 250 | 353.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_6 | 174713 | T | C | 250 | 319.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_6 | 174728 | T | C | 250 | 71.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_6 | 174730 | A | G | 250 | 635.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_6 | 174731 | T | C | 250 | 1555.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_6 | 174759 | T | C | 250 | 127.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_6 | 174793 | T | C | 249 | 1477.77 | noncoding | Transition | 0/1 | Unannotated |