| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_8 | 2870775 | T | C | 13 | 215.77 | exon | Transition | 0/1 | ARF guanine-nucleotide exchange factor GNOM (Pattern formation protein EMB30) (Protein EMBRYO DEFECTIVE 30) (Protein MIZU-KUSSEI2) (Protein VASCULAR NETWORK 7) |
| Scaffold_9 | 196844 | A | G | 16 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_9 | 245059 | T | C | 76 | 253.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_9 | 245081 | C | T | 29 | 44.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_9 | 537391 | C | T | 32 | 51.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_9 | 538155 | A | G | 39 | 134.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_9 | 538530 | C | T | 24 | 540.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_9 | 608435 | A | G | 11 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_9 | 966033 | A | G | 17 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_9 | 1043107 | C | T | 29 | 59.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_9 | 1154840 | A | G | 10 | 67.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_9 | 1261171 | T | C | 20 | 46.74 | intron | Transition | 1/1 | Unannotated |
| Scaffold_9 | 1388952 | A | G | 121 | 3825.77 | intron | Transition | 1/1 | Unannotated |
| Scaffold_9 | 1441869 | A | G | 11 | 67.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_9 | 1441870 | G | A | 11 | 67.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_9 | 1441970 | G | A | 14 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_9 | 1498599 | T | C | 77 | 184.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_9 | 1877917 | C | T | 14 | 36.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_9 | 1880224 | G | A | 12 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_9 | 1900273 | C | T | 16 | 370.56 | intron | Transition | 0/1 | Unannotated |