| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_10 | 1168491 | A | G | 10 | 61.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1335660 | T | C | 123 | 231.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1443304 | T | C | 22 | 749.77 | intron | Transition | 1/1 | Unannotated |
| Scaffold_10 | 1452181 | A | G | 28 | 197.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784097 | A | G | 18 | 132.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784220 | C | T | 31 | 270.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784283 | A | G | 24 | 308.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784367 | G | A | 31 | 573.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784397 | T | C | 24 | 543.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784433 | G | A | 17 | 138.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_11 | 190693 | C | T | 20 | 37.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_11 | 482314 | T | C | 37 | 69.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_11 | 544078 | A | G | 11 | 58.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_11 | 690299 | C | T | 17 | 547.94 | CDS | Transition | 1/1 | Chalcone synthase 1 (EC 2.3.1.74) (Naringenin-chalcone synthase 1) |
| Scaffold_11 | 734010 | G | A | 250 | 1097.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_11 | 807480 | T | C | 47 | 88.77 | CDS | Transition | 0/1 | ADP,ATP carrier protein 1, mitochondrial (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) |
| Scaffold_11 | 987962 | C | T | 15 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_11 | 1017697 | T | C | 17 | 48.77 | CDS | Transition | 0/1 | Chaperone protein ClpD, chloroplastic (EC 3.6.1.3) (ATP-dependent Clp protease ATP-binding subunit ClpD homolog) (Casein lytic proteinase D) (ERD1 protein) (Protein EARLY RESPONSIVE TO DEHYDRATION 1) (Protein SENESCENCE ASSOCIATED GENE 15) |
| Scaffold_11 | 1128354 | A | G | 36 | 140.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_11 | 1361549 | T | C | 10 | 36.77 | exon | Transition | 0/1 | Unannotated |