| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_12 | 359327 | T | C | 41 | 54.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 359349 | T | C | 34 | 790.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_12 | 359485 | A | G | 22 | 132.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 454522 | G | A | 19 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 607842 | C | T | 25 | 372.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 788452 | T | C | 250 | 129.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 788799 | G | A | 249 | 4230.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 1284038 | T | C | 31 | 54.77 | CDS | Transition | 0/1 | 3-oxo-Delta(4,5)-steroid 5-beta-reductase (EC 1.3.1.3) (Delta(4)-3-oxosteroid 5-beta-reductase) (Delta-4,5-steroid 5-beta-reductase) (At5beta-StR) (Progesterone 5-beta-reductase) (5beta-POR) (Protein VEIN PATTERNING 1) |
| Scaffold_12 | 1372918 | C | T | 15 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 1505623 | C | T | 16 | 137.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 1680693 | T | C | 10 | 42.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 1685921 | T | C | 10 | 119.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_12 | 2044631 | A | G | 22 | 68.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2044803 | G | A | 29 | 85.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2181206 | A | G | 22 | 37.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2286851 | T | C | 21 | 139.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2628557 | T | C | 75 | 793.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2628686 | G | A | 70 | 1407.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2628704 | C | T | 59 | 1303.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2628719 | C | T | 58 | 309.77 | CDS | Transition | 0/1 | Unannotated |