| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_12 | 2629071 | G | A | 195 | 1063.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2629119 | G | A | 233 | 2161.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2632588 | T | C | 156 | 1524.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2632843 | A | G | 10 | 75.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2632885 | G | A | 124 | 770.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2632890 | C | T | 133 | 1094.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2632891 | T | C | 137 | 864.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2633011 | T | C | 250 | 763.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2633080 | T | C | 249 | 2741.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2633143 | A | G | 250 | 3945.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2633233 | A | G | 93 | 1044.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2633266 | G | A | 34 | 204.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2633392 | G | A | 49 | 432.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2633425 | A | G | 41 | 158.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2633506 | A | G | 44 | 588.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2633539 | T | C | 34 | 449.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2633542 | C | T | 33 | 323.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 3080977 | G | A | 13 | 67.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 3227854 | A | G | 16 | 40.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_12 | 3600118 | A | G | 11 | 60.77 | exon | Transition | 0/1 | Unannotated |