| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_12 | 3691386 | T | C | 31 | 54.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 3712319 | T | C | 250 | 7608.77 | CDS | Transition | 1/1 | Unannotated |
| Scaffold_12 | 3780136 | G | A | 36 | 87.77 | CDS | Transition | 0/1 | Rop guanine nucleotide exchange factor 1 (AtRopGEF1) (Kinase partner protein-like) (KPP-like) (Rho of plants guanine nucleotide exchange factor 1) |
| Scaffold_12 | 3871148 | G | A | 12 | 36.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_12 | 3883203 | G | A | 54 | 563.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 3883254 | G | A | 98 | 122.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 4014652 | G | A | 13 | 134.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 4014658 | T | C | 17 | 128.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 141403 | A | G | 13 | 33.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 250783 | C | T | 44 | 32.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 263854 | A | G | 43 | 42.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 301923 | G | A | 85 | 794.77 | exon | Transition | 1/1 | Unannotated |
| Scaffold_13 | 302115 | T | C | 29 | 920.77 | intron | Transition | 1/1 | Unannotated |
| Scaffold_13 | 302209 | A | G | 250 | 533.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 915961 | T | C | 12 | 89.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 916061 | G | A | 19 | 77.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 963758 | C | T | 16 | 55.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 1005825 | A | G | 105 | 68.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 1066657 | T | C | 24 | 31.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 1185620 | T | C | 40 | 1317.77 | noncoding | Transition | 1/1 | Unannotated |