| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_13 | 1190164 | C | T | 148 | 3888.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_13 | 1229425 | T | C | 11 | 36.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 1797319 | A | G | 18 | 37.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 1822229 | C | T | 20 | 68.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 1822561 | T | C | 12 | 52.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2085706 | A | G | 32 | 53.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2245823 | T | C | 55 | 51.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2246828 | T | C | 16 | 202.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2298056 | A | G | 36 | 241.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2299362 | A | G | 29 | 204.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2401510 | T | C | 23 | 34.77 | CDS | Transition | 0/1 | Probable pectate lyase 1 (EC 4.2.2.2) (Pectate lyase A1) |
| Scaffold_13 | 2438727 | T | C | 250 | 1326.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2438751 | G | A | 249 | 1238.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2445851 | G | A | 182 | 3763.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2445860 | T | C | 215 | 592.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2445875 | G | A | 198 | 222.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2445944 | T | C | 111 | 1137.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2445947 | C | T | 99 | 769.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2445962 | G | A | 68 | 489.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 2612141 | T | C | 16 | 443.77 | exon | Transition | 1/1 | Unannotated |