| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_13 | 3510509 | T | C | 250 | 874.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_13 | 3517731 | C | T | 37 | 136.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_13 | 3517849 | C | T | 249 | 1876.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_14 | 75954 | A | G | 13 | 55.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_14 | 77938 | T | C | 12 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_14 | 96178 | A | G | 26 | 549.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_14 | 105123 | T | C | 31 | 44.77 | exon | Transition | 0/1 | F-box/kelch-repeat protein At5g60570 |
| Scaffold_14 | 586938 | C | T | 12 | 232.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_14 | 724915 | C | T | 39 | 78.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_14 | 1356306 | C | T | 11 | 172.78 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_14 | 1402054 | T | C | 22 | 56.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_14 | 1721760 | G | A | 31 | 348.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_14 | 1940920 | G | A | 20 | 135.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_14 | 1940953 | C | T | 30 | 693.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_14 | 1941020 | C | T | 20 | 286.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_14 | 1996803 | C | T | 17 | 171.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_14 | 1997829 | T | C | 171 | 147.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_14 | 1997834 | T | C | 167 | 158.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_14 | 1997881 | T | C | 86 | 658.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_14 | 1997891 | A | G | 68 | 441.77 | CDS | Transition | 0/1 | Unannotated |