| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_16 | 1604034 | T | C | 17 | 197.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1604069 | C | T | 19 | 379.77 | exon | Transition | 0/1 | 2-hydroxyisoflavanone dehydratase (EC 3.1.1.1) (EC 4.2.1.105) (Carboxylesterase HIDM) |
| Scaffold_16 | 1604637 | A | G | 250 | 899.77 | CDS | Transition | 0/1 | 2-hydroxyisoflavanone dehydratase (EC 3.1.1.1) (EC 4.2.1.105) (Carboxylesterase HIDM) |
| Scaffold_16 | 1871457 | A | G | 19 | 34.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1914126 | A | G | 24 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1915448 | G | A | 11 | 64.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1934693 | T | C | 153 | 621.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1934774 | A | G | 113 | 32.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_17 | 142303 | G | A | 53 | 1344.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_17 | 142320 | C | T | 65 | 1231.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_17 | 142344 | A | G | 88 | 600.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_17 | 142411 | T | C | 50 | 337.77 | exon | Transition | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 142559 | T | C | 84 | 166.77 | exon | Transition | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 142586 | G | C,T | 79 | 3928.77 | exon | Transition | 1/2 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 142592 | C | T | 133 | 1552.77 | exon | Transition | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 142676 | T | C | 108 | 156.77 | exon | Transition | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 282147 | G | A | 34 | 51.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_17 | 600452 | C | T | 10 | 42.77 | CDS | Transition | 0/1 | Serine/threonine-protein kinase BRI1-like 1 (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1) |
| Scaffold_17 | 677468 | T | C | 32 | 59.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_17 | 967397 | T | C | 11 | 30.77 | exon | Transition | 0/1 | Unannotated |