| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_18 | 1574908 | G | A | 10 | 30.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_18 | 1726713 | C | T | 20 | 48.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_18 | 1924151 | C | T | 36 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_18 | 1955281 | G | A | 23 | 56.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_18 | 2009448 | G | A | 42 | 41.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At3g53700, chloroplastic (Protein MATERNAL EFFECT EMBRYO ARREST 40) |
| Scaffold_18 | 2009610 | G | A | 23 | 108.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At3g53700, chloroplastic (Protein MATERNAL EFFECT EMBRYO ARREST 40) |
| Scaffold_18 | 2078293 | G | A | 31 | 62.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_18 | 2260169 | C | T | 24 | 159.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_18 | 2339890 | T | C | 22 | 290.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_18 | 2607594 | A | G | 24 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_19 | 18736 | T | C | 11 | 64.77 | intron | Transition | 0/1 | Phospholipase A I (AtPLA1) (EC 3.1.1.-) |
| Scaffold_19 | 190207 | G | A | 13 | 64.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_19 | 526166 | T | C | 16 | 412.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_19 | 531989 | A | G | 15 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_19 | 591074 | G | A | 10 | 104.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_19 | 676145 | T | C | 16 | 99.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_19 | 1707709 | C | T | 51 | 97.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_19 | 1914078 | T | C | 70 | 92.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_19 | 1924384 | C | T | 13 | 208.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_19 | 1977478 | C | T | 13 | 32.77 | exon | Transition | 0/1 | Unannotated |