| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_19 | 1979323 | T | C | 10 | 30.77 | exon | Transition | 0/1 | Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 (EC 2.7.10.1) (EC 2.7.11.1) (Protein EVERSHED) (Protein SUPPRESSOR OF BIR1-1) |
| Scaffold_19 | 2084295 | A | G | 68 | 66.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_19 | 2123334 | C | T | 27 | 550.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_20 | 18628 | T | C | 16 | 40.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_20 | 151653 | C | T | 15 | 134.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_20 | 188358 | T | C | 19 | 37.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_20 | 269582 | T | C | 14 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_20 | 269639 | A | G | 249 | 155.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_20 | 273281 | G | A | 14 | 36.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_20 | 536180 | C | T | 14 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_20 | 680583 | C | T | 13 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_20 | 738299 | G | A | 10 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_20 | 1044956 | T | C | 22 | 108.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_20 | 1045228 | T | C | 11 | 55.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_20 | 2052007 | T | C | 17 | 61.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_20 | 2227560 | C | T | 20 | 54.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_21 | 168020 | C | T | 15 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_21 | 225584 | A | G | 38 | 308.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_21 | 229375 | T | C | 19 | 496.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_21 | 297933 | T | C | 27 | 31.77 | CDS | Transition | 0/1 | LRR receptor kinase SERK2 (EC 2.7.11.1) (BRI1-associated receptor kinase 1 homolog 5) (OsBAK1-5) (Somatic embryogenesis receptor kinase 4) (OsSERK4) |