| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_23 | 1204335 | A | G | 18 | 46.77 | CDS | Transition | 0/1 | Pentatricopeptide repeat-containing protein At1g80270, mitochondrial |
| Scaffold_23 | 1467540 | A | G | 21 | 65.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1485393 | A | G | 25 | 204.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1619073 | G | A | 29 | 90.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1619132 | A | G | 249 | 367.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1619189 | C | T | 232 | 1858.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1619228 | T | C | 233 | 2682.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1619237 | T | C | 250 | 2341.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1619270 | C | T | 227 | 738.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1619279 | C | T | 221 | 4597.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1619385 | C | T | 21 | 281.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1620839 | G | A | 48 | 139.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1620842 | C | T | 48 | 145.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1687324 | A | G | 16 | 33.77 | exon | Transition | 0/1 | Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 (Zinc finger protein STOP1) |
| Scaffold_23 | 1687652 | A | G | 10 | 61.77 | exon | Transition | 0/1 | Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 (Zinc finger protein STOP1) |
| Scaffold_23 | 1709638 | G | A | 13 | 250.88 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_23 | 1828894 | T | C | 24 | 36.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_24 | 203046 | A | G | 13 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_24 | 203088 | G | A | 27 | 301.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_24 | 358003 | T | C | 11 | 30.77 | CDS | Transition | 0/1 | Unannotated |