| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_24 | 358004 | C | T | 11 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_24 | 621106 | A | G | 23 | 142.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 639084 | T | C | 27 | 37.77 | exon | Transition | 0/1 | NF-X1-type zinc finger protein NFXL2 (AtNFXL2) (EC 2.3.2.-) (Protein EARLY BIRD) |
| Scaffold_24 | 751237 | T | C | 20 | 37.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_24 | 864158 | G | A | 24 | 51.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_24 | 943264 | C | T | 213 | 2499.77 | exon | Transition | 0/1 | Transcription factor bHLH14 (Basic helix-loop-helix protein 14) (AtbHLH14) (bHLH 14) (Transcription factor EN 33) (bHLH transcription factor bHLH014) |
| Scaffold_24 | 943800 | G | A | 71 | 837.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1011186 | A | G | 18 | 482.96 | intron | Transition | 1/1 | Unannotated |
| Scaffold_24 | 1062729 | A | G | 14 | 52.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1130257 | G | A | 31 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1156181 | A | G | 22 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1300816 | A | G | 43 | 35.77 | CDS | Transition | 0/1 | Vacuolar-sorting receptor 1 (80 kDa proaleurein-binding protein) (BP-80) |
| Scaffold_24 | 1537722 | C | T | 10 | 90.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1570857 | T | C | 11 | 76.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1760975 | G | A | 11 | 35.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1967150 | T | C | 12 | 63.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_24 | 2039677 | A | G | 99 | 2067.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 2042534 | C | T | 17 | 89.77 | intron | Transition | 0/1 | Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.11.1) |
| Scaffold_24 | 2115767 | C | T | 19 | 37.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 2211131 | A | G | 20 | 31.77 | exon | Transition | 0/1 | Unannotated |