| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_25 | 185394 | G | A | 11 | 42.77 | CDS | Transition | 0/1 | Potassium transporter 8 (AtHAK8) (AtPOT8) |
| Scaffold_25 | 261559 | A | G | 14 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_25 | 371487 | C | T | 27 | 188.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_25 | 371509 | C | T | 41 | 589.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_25 | 394108 | A | G | 15 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_25 | 553728 | G | A | 41 | 57.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_25 | 654809 | T | C | 15 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_25 | 654810 | C | T | 19 | 40.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_25 | 751217 | A | G | 250 | 4722.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_25 | 751262 | C | T | 250 | 525.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_25 | 751294 | C | T | 250 | 6437.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_25 | 751324 | C | T | 233 | 5474.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_25 | 806534 | T | C | 13 | 39.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_25 | 806539 | C | T | 10 | 181.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_25 | 1045739 | C | T | 87 | 899.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_25 | 1045753 | T | C | 87 | 1891.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_25 | 1045768 | A | G | 87 | 999.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_25 | 1089527 | T | C | 12 | 187.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_25 | 1089537 | G | A | 11 | 78.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_25 | 1110834 | G | A | 11 | 52.77 | exon | Transition | 0/1 | Probable protein phosphatase 2C 4 (AtPP2C04) (EC 3.1.3.16) (Protein POLTERGEIST-LIKE 5) (Protein phosphatase 2C PLL5) (PP2C PLL5) |