| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_26 | 741307 | T | C | 21 | 69.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_26 | 760372 | C | T | 42 | 373.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_26 | 810357 | C | T | 63 | 738.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_26 | 813236 | T | C | 75 | 669.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_26 | 1029264 | T | C | 23 | 37.77 | CDS | Transition | 0/1 | Filament-like plant protein (LeFPP) (Fragment) |
| Scaffold_26 | 1269279 | A | G | 18 | 49.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_26 | 1280891 | C | T | 19 | 45.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_26 | 1322581 | T | C | 20 | 37.77 | exon | Transition | 0/1 | Putative clathrin assembly protein At2g25430 |
| Scaffold_26 | 1367577 | T | C | 19 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_26 | 1380382 | G | A | 51 | 69.77 | exon | Transition | 0/1 | Phospholipase A1-Ibeta2, chloroplastic (EC 3.1.1.-) |
| Scaffold_26 | 1750759 | T | C | 21 | 96.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_26 | 1766253 | A | G | 98 | 1124.77 | CDS | Transition | 0/1 | Uncharacterized TPR repeat-containing protein At1g05150 |
| Scaffold_26 | 1810683 | C | T | 12 | 126.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_26 | 1816379 | A | G | 19 | 37.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_26 | 1851914 | A | G | 18 | 49.77 | CDS | Transition | 0/1 | Eukaryotic initiation factor 4A-1 (eIF-4A-1) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-1) (DEAD-box ATP-dependent RNA helicase 4) |
| Scaffold_26 | 1948845 | T | C | 32 | 56.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_26 | 1999629 | T | C | 15 | 101.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_26 | 2009335 | A | G | 11 | 61.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_26 | 2030580 | C | T | 19 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_27 | 319411 | C | T | 13 | 177.77 | exon | Transition | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |