| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_27 | 319918 | G | A | 13 | 76.77 | exon | Transition | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 480662 | T | C | 24 | 68.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_27 | 495358 | T | C | 37 | 62.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_27 | 548972 | G | A | 12 | 42.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_27 | 730424 | T | C | 13 | 46.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_27 | 731260 | T | C | 28 | 448.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_27 | 792447 | G | A | 16 | 33.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 807249 | T | C | 15 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_27 | 817332 | A | G | 16 | 71.77 | exon | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 817893 | T | C | 23 | 86.77 | CDS | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 817905 | A | G | 24 | 83.77 | CDS | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 818034 | C | T | 17 | 360.77 | CDS | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 820035 | A | G | 24 | 495.77 | CDS | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 989101 | A | G | 20 | 80.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1024392 | A | G | 13 | 101.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1027456 | G | A | 11 | 58.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1193743 | T | C | 33 | 63.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1223773 | A | G | 11 | 42.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1348359 | A | G | 250 | 150.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1348444 | C | T | 249 | 496.77 | exon | Transition | 0/1 | Unannotated |