| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_27 | 1349226 | A | G | 250 | 173.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1350112 | G | A | 175 | 3728.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1436286 | A | G | 18 | 72.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1550907 | T | C | 29 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1558969 | T | C | 82 | 35.77 | exon | Transition | 0/1 | Protein EXORDIUM-like 3 |
| Scaffold_27 | 1571597 | G | A | 13 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1808293 | T | C | 145 | 113.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1808936 | T | C | 30 | 173.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1809026 | G | A | 41 | 566.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1809074 | G | A | 53 | 250.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1809212 | C | T | 49 | 665.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1813641 | G | A | 77 | 850.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1813693 | C | T | 41 | 628.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_28 | 67483 | G | A | 17 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 150339 | T | C | 17 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 163693 | A | G | 28 | 405.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_28 | 369694 | T | C | 36 | 30.77 | exon | Transition | 0/1 | Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.4.19.12) (Deubiquitinating enzyme 2) (AtUBP2) (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2) |
| Scaffold_28 | 453305 | T | C | 28 | 404.77 | intron | Transition | 0/1 | Probable polyamine oxidase 4 (AtPAO4) (EC 1.5.3.16) (Amine oxidase 2) |
| Scaffold_28 | 464859 | C | T | 27 | 43.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_28 | 464871 | T | C | 30 | 37.77 | CDS | Transition | 0/1 | Unannotated |