| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_28 | 495940 | T | C | 44 | 832.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 496025 | G | A | 17 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 496463 | A | G | 40 | 1216.77 | exon | Transition | 1/1 | Unannotated |
| Scaffold_28 | 496553 | A | G | 10 | 47.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 496634 | G | A | 20 | 305.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 496636 | G | A | 20 | 311.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 496742 | A | G | 105 | 884.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 573289 | C | T | 29 | 73.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_28 | 575682 | G | A | 12 | 58.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 938779 | C | T | 18 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_28 | 1592914 | T | C | 26 | 51.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_28 | 1728353 | T | C | 20 | 43.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 1782314 | A | G | 13 | 129.77 | CDS | Transition | 0/1 | Glycerophosphodiester phosphodiesterase GDPD2 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 2) (AtGDPD2) |
| Scaffold_28 | 1950074 | A | G | 47 | 836.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_29 | 196255 | C | T | 14 | 101.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_29 | 198860 | C | T | 26 | 191.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_29 | 291959 | G | A | 10 | 42.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_29 | 318816 | C | T | 20 | 227.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_29 | 318885 | G | A | 22 | 141.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_29 | 320717 | A | G | 16 | 58.77 | exon | Transition | 0/1 | Unannotated |