| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_29 | 344412 | A | G | 10 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_29 | 503760 | T | C | 21 | 34.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial |
| Scaffold_29 | 597583 | T | C | 28 | 94.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_29 | 597584 | C | T | 31 | 82.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_29 | 599943 | C | T | 19 | 46.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_29 | 787611 | T | C | 17 | 43.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_29 | 908150 | G | A | 34 | 38.77 | exon | Transition | 0/1 | Xyloglucan glycosyltransferase 4 (EC 2.4.1.-) (Cellulose synthase-like protein C4) (AtCslC4) (Xyloglucan synthase 4) |
| Scaffold_29 | 1199722 | A | G | 96 | 97.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_29 | 1199796 | A | G | 39 | 811.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_29 | 1309427 | A | G | 32 | 59.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_29 | 1342006 | T | C | 14 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_29 | 1483017 | T | C | 14 | 40.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_29 | 1496595 | A | G | 39 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_29 | 1509581 | T | C | 10 | 73.77 | CDS | Transition | 0/1 | DEAD-box ATP-dependent RNA helicase 53, mitochondrial (EC 3.6.4.13) |
| Scaffold_29 | 1599978 | A | G | 11 | 81.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_30 | 135356 | T | C | 52 | 100.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_30 | 351277 | G | A | 219 | 162.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_30 | 351278 | A | G | 196 | 249.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_30 | 511886 | T | C | 13 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_30 | 779361 | C | T | 23 | 40.77 | CDS | Transition | 0/1 | Unannotated |