| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_30 | 1874063 | G | A | 25 | 206.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1874072 | G | A | 32 | 193.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1874729 | T | C | 31 | 290.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1874884 | A | G | 21 | 191.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1874921 | G | A | 24 | 177.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_31 | 42455 | G | A | 18 | 33.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_31 | 644581 | A | G | 25 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_31 | 653670 | A | G | 14 | 33.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_31 | 661206 | C | T | 18 | 217.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_31 | 690218 | G | A | 33 | 155.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_31 | 796235 | T | C | 31 | 943.89 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_31 | 822601 | T | C | 12 | 132.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_31 | 867276 | G | A | 56 | 1035.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_31 | 867362 | A | G | 40 | 559.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_31 | 867438 | A | G | 65 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_31 | 1214417 | T | C | 17 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_31 | 1372210 | T | C | 250 | 230.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_31 | 1372211 | A | G | 250 | 180.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_31 | 1372233 | T | C | 249 | 267.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_31 | 1564305 | A | G | 10 | 30.77 | CDS | Transition | 0/1 | Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 (SDH) (EC 1.-.-.-) |