| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_33 | 1066525 | G | A | 17 | 335.9 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_33 | 1178639 | T | C | 10 | 42.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_33 | 1519613 | A | G | 249 | 5401.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_33 | 1613725 | A | G | 19 | 52.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_33 | 1649728 | T | C | 46 | 719.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_33 | 1652458 | A | G | 18 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_33 | 1723218 | A | G | 16 | 81.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_33 | 1820971 | A | G | 27 | 226.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_33 | 1900657 | T | C | 27 | 151.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_33 | 1901233 | T | C | 15 | 58.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_34 | 275129 | A | G | 13 | 317.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_34 | 275156 | A | G | 18 | 71.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_34 | 504224 | T | C | 11 | 64.77 | CDS | Transition | 0/1 | Phosphatidylinositol 4-kinase alpha 1 (PI4-kinase alpha 1) (PtdIns-4-kinase alpha 1) (EC 2.7.1.67) (Phosphatidylinositol 4-OH kinase alpha1) (AtPI4Kalpha1) (PI-4Kalpha1) |
| Scaffold_34 | 716665 | G | A | 250 | 4340.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_34 | 716779 | C | T | 250 | 807.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_34 | 716869 | G | A | 65 | 442.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_34 | 783133 | A | G | 48 | 1113.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_34 | 861677 | G | A | 250 | 1995.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_34 | 861941 | A | G | 250 | 4404.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_34 | 862007 | A | G | 250 | 6052.77 | exon | Transition | 0/1 | Unannotated |