| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_4 | 215381 | C | G | 11 | 64.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 215385 | A | T | 11 | 61.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 243952 | T | G | 11 | 64.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 261784 | A | T | 20 | 31.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 341704 | A | C | 14 | 36.77 | exon | Transversion | 0/1 | Probable 2-oxoglutarate-dependent dioxygenase JRG21 (EC 1.14.11.-) (Protein JASMONATE-REGULATED GENE 21) |
| Scaffold_4 | 848627 | C | A | 16 | 43.77 | exon | Transversion | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase IRK (EC 2.7.11.1) (Inflorescence and root apices receptor-like kinase) |
| Scaffold_4 | 1103874 | C | A | 135 | 115.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 1103902 | A | T | 248 | 2016.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 1103932 | T | A | 247 | 1701.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 1103972 | A | C | 193 | 501.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 1403046 | T | A | 16 | 188.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 1777860 | G | T | 29 | 31.77 | exon | Transversion | 0/1 | Galactan beta-1,4-galactosyltransferase GALS3 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 3) |
| Scaffold_4 | 1777959 | T | A | 11 | 67.77 | exon | Transversion | 0/1 | Galactan beta-1,4-galactosyltransferase GALS3 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 3) |
| Scaffold_4 | 1968412 | A | T | 34 | 45.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 2141109 | A | C | 28 | 62.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 2291953 | C | A | 10 | 30.77 | CDS | Transversion | 0/1 | Linoleate 9S-lipoxygenase 6 (EC 1.13.11.58) (Lipoxygenase 1-5) (StLOX1) (lox1:St:3) (Fragment) |
| Scaffold_5 | 395343 | C | G | 182 | 1680.77 | CDS | Transversion | 0/1 | 40S ribosomal protein S10-3 |
| Scaffold_5 | 455354 | G | C | 14 | 105.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_5 | 763300 | G | C | 61 | 2169.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_5 | 763301 | C | G | 69 | 2557.77 | CDS | Transversion | 1/1 | Unannotated |