| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_18 | 2339887 | G | C | 22 | 286.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_18 | 2602018 | G | T | 13 | 382.31 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_18 | 2656242 | C | G | 19 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_19 | 18735 | G | T | 11 | 64.77 | intron | Transversion | 0/1 | Phospholipase A I (AtPLA1) (EC 3.1.1.-) |
| Scaffold_19 | 526167 | A | C | 14 | 370.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_19 | 857535 | T | G | 11 | 297.18 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_19 | 1319419 | A | C | 24 | 56.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_19 | 1495579 | C | A | 11 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_19 | 1875287 | T | A | 20 | 49.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_19 | 2084335 | C | A | 18 | 542.1 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_20 | 19160 | A | C | 10 | 61.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 168870 | C | G | 11 | 52.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 269583 | G | C | 41 | 125.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 269586 | A | T | 48 | 132.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 271640 | A | C | 10 | 92.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 916879 | A | T | 14 | 384.74 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 1024576 | A | C | 25 | 68.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 1073386 | T | G | 19 | 80.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 1272134 | A | C | 25 | 108.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 2052006 | G | T | 17 | 61.77 | noncoding | Transversion | 0/1 | Unannotated |