| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_37 | 1434282 | A | G | 15 | 55.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_37 | 1557223 | C | T | 11 | 36.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_38 | 56584 | C | T | 14 | 314.77 | CDS | Transition | 0/1 | CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3) |
| Scaffold_38 | 56607 | C | T | 27 | 738.94 | CDS | Transition | 0/1 | CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3) |
| Scaffold_38 | 531545 | A | G | 10 | 61.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_38 | 635091 | C | T | 12 | 42.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_38 | 673605 | A | G | 46 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_38 | 794665 | A | G | 10 | 92.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_38 | 937313 | G | A | 30 | 99.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_38 | 1198586 | T | C | 21 | 87.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_38 | 1236269 | T | C | 33 | 72.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_38 | 1364935 | T | C | 24 | 56.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_38 | 1470457 | T | C | 11 | 58.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_38 | 1677482 | T | C | 73 | 36.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_38 | 1881404 | T | C | 17 | 120.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_38 | 2129055 | T | C | 17 | 49.77 | exon | Transition | 0/1 | Kaempferol 3-O-beta-D-galactosyltransferase (F3GalTase) (EC 2.4.1.234) |
| Scaffold_38 | 2233034 | T | C | 11 | 36.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_40 | 39278 | G | A | 15 | 291.84 | exon | Transition | 0/1 | Unannotated |
| Scaffold_40 | 39375 | A | G | 40 | 231.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_40 | 39979 | T | C | 30 | 244.77 | CDS | Transition | 0/1 | Unannotated |