| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_41 | 1792742 | T | C | 71 | 76.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_41 | 1792823 | G | A | 11 | 55.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_42 | 60358 | G | A | 13 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_42 | 99937 | T | C | 12 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 100037 | A | G | 17 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 163314 | T | C | 11 | 132.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 304029 | G | A | 26 | 66.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_42 | 305349 | T | C | 14 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 305350 | T | C | 14 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 630971 | A | G | 41 | 1469.77 | intron | Transition | 1/1 | Unannotated |
| Scaffold_42 | 632502 | A | G | 250 | 7432.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 701156 | C | T | 16 | 55.77 | CDS | Transition | 0/1 | Pectinesterase 2.1 (PE 2.1) (EC 3.1.1.11) (Pectin methylesterase 2.1) |
| Scaffold_42 | 812674 | G | A | 18 | 46.77 | CDS | Transition | 0/1 | Plasma membrane ATPase (EC 7.1.2.1) (Proton pump) |
| Scaffold_42 | 822566 | T | C | 54 | 1922.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_42 | 862944 | T | C | 10 | 67.77 | CDS | Transition | 0/1 | Probable mitochondrial adenine nucleotide transporter BTL3 (Adenine nucleotide transporter BT1-like protein 3) |
| Scaffold_42 | 986360 | A | G | 127 | 72.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 986363 | T | C | 126 | 83.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 986417 | A | G | 57 | 1304.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 1090205 | G | A | 36 | 727.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 1090277 | T | C | 49 | 820.77 | CDS | Transition | 0/1 | Unannotated |