| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_42 | 1090307 | T | C | 42 | 725.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 1091549 | A | G | 23 | 127.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 1091718 | G | A | 11 | 169.78 | intron | Transition | 0/1 | Unannotated |
| Scaffold_42 | 1096403 | T | C | 87 | 2293.77 | CDS | Transition | 1/1 | Unannotated |
| Scaffold_42 | 1096433 | G | A | 12 | 283.56 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 1340551 | T | C | 20 | 37.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 1393147 | A | G | 11 | 58.77 | CDS | Transition | 0/1 | APO protein 1, chloroplastic (Accumulation of photosystem I protein 1) (Protein ACCUMULATION OF PHOTOSYSTEM ONE 1) |
| Scaffold_42 | 1433325 | T | C | 95 | 58.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_42 | 1433326 | T | C | 117 | 135.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_42 | 1469441 | T | C | 10 | 67.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_43 | 50089 | C | T | 14 | 117.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_43 | 50191 | A | G | 42 | 35.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_43 | 103331 | A | G | 13 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_43 | 193533 | A | G | 82 | 511.77 | exon | Transition | 0/1 | F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) |
| Scaffold_43 | 198741 | G | A | 31 | 532.77 | exon | Transition | 0/1 | F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) |
| Scaffold_43 | 198759 | C | T | 48 | 343.77 | exon | Transition | 0/1 | F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) |
| Scaffold_43 | 198779 | G | A | 68 | 722.77 | exon | Transition | 0/1 | F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) |
| Scaffold_43 | 258480 | G | A | 16 | 46.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_43 | 316740 | G | A | 21 | 40.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_43 | 347090 | A | G | 12 | 86.77 | CDS | Transition | 0/1 | Very-long-chain enoyl-CoA reductase (EC 1.3.1.93) (Enoyl-CoA reductase) (AtECR) (Protein ECERIFERUM 10) (Synaptic glycoprotein SC2-like protein) |