| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_43 | 1754321 | C | T | 10 | 149.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_43 | 1782380 | C | T | 13 | 55.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_43 | 1853926 | C | T | 20 | 69.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_44 | 33631 | A | G | 17 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_44 | 627657 | A | G | 36 | 75.77 | exon | Transition | 0/1 | Histone H3.2 (Histone H3.1) (Major histone H3) |
| Scaffold_44 | 627789 | A | G | 81 | 1516.77 | exon | Transition | 0/1 | Histone H3.2 (Histone H3.1) (Major histone H3) |
| Scaffold_44 | 627889 | T | C | 68 | 422.77 | exon | Transition | 0/1 | Histone H3.2 (Histone H3.1) (Major histone H3) |
| Scaffold_44 | 627954 | T | C | 22 | 267.77 | exon | Transition | 0/1 | Histone H3.2 (Histone H3.1) (Major histone H3) |
| Scaffold_44 | 627960 | C | T | 19 | 225.77 | exon | Transition | 0/1 | Histone H3.2 (Histone H3.1) (Major histone H3) |
| Scaffold_44 | 632048 | A | G | 21 | 74.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_44 | 649516 | T | C | 15 | 30.77 | CDS | Transition | 0/1 | LRR receptor-like serine/threonine-protein kinase FEI 1 (EC 2.7.11.1) |
| Scaffold_44 | 886729 | A | G | 31 | 188.77 | CDS | Transition | 0/1 | DnaJ protein ERDJ2A (Chaperone protein dnaJ 21) (AtDjC21) (AtJ21) (Endoplasmic reticulum dnaJ domain-containing protein 2A) (AtERdj2A) (Translocation protein SEC63 homolog ERDJ2A) |
| Scaffold_44 | 905334 | G | A | 211 | 7663.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_44 | 905343 | C | T | 250 | 66.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_44 | 921289 | T | C | 16 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_44 | 926101 | A | G | 10 | 55.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_44 | 948818 | A | G | 14 | 30.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_44 | 975003 | C | T | 15 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_44 | 1206576 | T | C | 15 | 49.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_44 | 1466826 | T | C | 10 | 58.77 | CDS | Transition | 0/1 | Unannotated |