| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_45 | 918276 | A | G | 18 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_45 | 975249 | G | A | 21 | 77.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_45 | 986811 | A | G | 32 | 50.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_45 | 1820435 | G | A | 137 | 88.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_46 | 517075 | A | G | 10 | 278.56 | intron | Transition | 0/1 | Unannotated |
| Scaffold_46 | 518021 | A | C,T | 14 | 694.77 | intron | Transition | 1/2 | Unannotated |
| Scaffold_46 | 545810 | A | G | 13 | 70.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_46 | 551572 | G | A | 34 | 66.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_46 | 551573 | A | G | 23 | 142.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_46 | 570048 | T | C | 69 | 87.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_46 | 570395 | T | C | 69 | 172.77 | exon | Transition | 0/1 | Delta(8)-fatty-acid desaturase 2 (EC 1.14.19.29) (Delta(8)-sphingolipid desaturase 2) (Sphingoid long-chain base desaturase 2) (Sphingoid LCB desaturase 2) (Sphingolipid 8-(E/Z)-desaturase 2) |
| Scaffold_46 | 588428 | T | C | 24 | 68.77 | exon | Transition | 0/1 | Cullin-3A (AtCUL3a) |
| Scaffold_46 | 1095514 | T | C | 10 | 61.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_46 | 1100274 | C | T | 17 | 209.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_46 | 1116846 | T | C | 18 | 40.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_46 | 1166265 | T | C | 22 | 43.77 | exon | Transition | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (EC 2.7.11.1) |
| Scaffold_46 | 1258607 | A | G | 146 | 2231.77 | CDS | Transition | 0/1 | Cytochrome P450 81E8 (EC 1.14.13.-) |
| Scaffold_46 | 1258691 | C | T | 133 | 1810.77 | CDS | Transition | 0/1 | Cytochrome P450 81E8 (EC 1.14.13.-) |
| Scaffold_46 | 1258713 | A | G | 51 | 265.77 | CDS | Transition | 0/1 | Cytochrome P450 81E8 (EC 1.14.13.-) |
| Scaffold_46 | 1266209 | A | G | 10 | 32.77 | CDS | Transition | 0/1 | Unannotated |