| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_46 | 1290814 | T | C | 18 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_46 | 1509791 | T | C | 27 | 146.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_46 | 1509845 | T | C | 40 | 269.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_46 | 1615378 | A | G | 12 | 64.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_46 | 1788873 | C | T | 22 | 43.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_46 | 1849541 | T | C | 11 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_46 | 2045252 | T | C | 24 | 265.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_47 | 204222 | C | T | 13 | 123.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_47 | 248684 | T | C | 105 | 3676.77 | intron | Transition | 1/1 | Unannotated |
| Scaffold_47 | 250446 | G | A | 250 | 374.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_47 | 250485 | C | T | 197 | 5890.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_47 | 250509 | G | A | 242 | 8686.77 | CDS | Transition | 1/1 | Unannotated |
| Scaffold_47 | 318800 | T | C | 10 | 61.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_47 | 413237 | G | A | 15 | 425.78 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_47 | 549936 | A | G | 14 | 49.77 | CDS | Transition | 0/1 | Myosin-1 (AtATM1) |
| Scaffold_47 | 553686 | G | A | 19 | 46.77 | CDS | Transition | 0/1 | Myosin-1 (AtATM1) |
| Scaffold_47 | 736501 | C | T | 15 | 319.9 | exon | Transition | 0/1 | Unannotated |
| Scaffold_47 | 905280 | C | T | 17 | 54.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_47 | 972879 | G | A | 11 | 292.9 | CDS | Transition | 0/1 | Probable carotenoid cleavage dioxygenase 4, chloroplastic (AtCCD4) (EC 1.14.99.-) (AtNCED4) |
| Scaffold_47 | 972897 | A | G | 17 | 417.74 | CDS | Transition | 0/1 | Probable carotenoid cleavage dioxygenase 4, chloroplastic (AtCCD4) (EC 1.14.99.-) (AtNCED4) |