| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_47 | 998096 | A | G | 13 | 58.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1033298 | T | C | 24 | 59.77 | exon | Transition | 0/1 | Uncharacterized protein At5g39865 |
| Scaffold_47 | 1144141 | C | T | 14 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1146179 | T | C | 14 | 76.77 | noncoding | Transition | 0/1 | Sugar transport protein 14 (Hexose transporter 14) |
| Scaffold_47 | 1151398 | G | A | 42 | 538.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151404 | C | T | 46 | 409.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151557 | G | A | 14 | 385.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151611 | C | T | 53 | 1596.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151614 | G | A | 64 | 1949.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151809 | A | G | 121 | 1179.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151851 | A | G | 159 | 297.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151941 | A | G | 166 | 3132.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151953 | C | T | 184 | 698.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1154147 | T | C | 35 | 666.77 | exon | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1242119 | A | G | 18 | 43.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1357664 | A | G | 26 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1357704 | A | G | 19 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1402033 | T | C | 92 | 1338.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1596094 | A | G | 56 | 72.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1629188 | A | G | 10 | 45.77 | CDS | Transition | 0/1 | Unannotated |