| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_48 | 931219 | C | T | 16 | 133.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_48 | 931240 | C | T | 16 | 340.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_48 | 931273 | T | C | 15 | 295.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_48 | 1106905 | A | G | 23 | 383.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_48 | 1107031 | A | G | 100 | 1342.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_48 | 1111619 | G | A | 147 | 523.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_48 | 1111625 | C | T | 136 | 593.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_48 | 1111682 | C | T | 95 | 1352.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_48 | 1128415 | T | C | 19 | 454.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_48 | 1759305 | G | A | 41 | 66.77 | exon | Transition | 0/1 | NADPH-dependent pterin aldehyde reductase (EC 1.1.1.-) |
| Scaffold_48 | 2018386 | G | A | 18 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_48 | 2018387 | A | G | 15 | 55.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_48 | 2357957 | T | C | 13 | 61.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_48 | 2485376 | A | G | 10 | 61.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_49 | 274216 | T | C | 23 | 68.77 | CDS | Transition | 0/1 | Probable serine/threonine-protein kinase At1g01540 (EC 2.7.11.1) |
| Scaffold_49 | 335354 | T | C | 12 | 52.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 430860 | T | C | 16 | 70.77 | exon | Transition | 0/1 | Cationic amino acid transporter 5 |
| Scaffold_49 | 431749 | T | C | 15 | 39.77 | exon | Transition | 0/1 | Cationic amino acid transporter 5 |
| Scaffold_49 | 555026 | A | G | 25 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 596399 | G | A | 10 | 45.77 | exon | Transition | 0/1 | Unannotated |