| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_49 | 663811 | C | T | 18 | 52.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 795234 | T | C | 63 | 155.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 821024 | C | T | 86 | 519.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 821071 | C | T | 79 | 602.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 821969 | G | A | 48 | 168.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 896906 | C | T | 35 | 56.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 1102858 | T | C | 12 | 92.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 1458660 | T | C | 16 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 1501219 | T | C | 26 | 65.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 1501220 | C | T | 26 | 68.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 1970674 | A | G | 74 | 119.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_49 | 2139567 | G | A | 191 | 5835.77 | exon | Transition | 1/1 | Unannotated |
| Scaffold_49 | 2205802 | T | C | 88 | 469.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_50 | 57396 | T | C | 59 | 144.77 | CDS | Transition | 0/1 | Sucrose-phosphatase 2 (NtSPP2) (EC 3.1.3.24) |
| Scaffold_50 | 84731 | C | T | 18 | 272.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_50 | 264105 | A | G | 250 | 355.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_50 | 264114 | T | C | 250 | 519.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_50 | 264144 | T | C | 249 | 982.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_50 | 264153 | A | G | 249 | 175.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_50 | 348660 | G | A | 13 | 61.77 | CDS | Transition | 0/1 | Probable E3 ubiquitin-protein ligase LUL4 (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase LUL4) (Protein LOG2-LIKE UBIQUITIN LIGASE 4) (RING finger protein 208) |