| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_50 | 547244 | T | C | 36 | 1046.77 | CDS | Transition | 1/1 | Unannotated |
| Scaffold_50 | 767673 | A | G | 14 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 774502 | A | G | 27 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 826001 | A | G | 10 | 132.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 933118 | C | T | 250 | 1420.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 933173 | T | C | 241 | 37.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 933231 | T | C | 34 | 157.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 1287764 | T | C | 226 | 3521.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 1316339 | T | C | 19 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 1543127 | C | T | 12 | 39.77 | CDS | Transition | 0/1 | Protein HIRA (Histone regulator protein) |
| Scaffold_50 | 1572539 | G | A | 15 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 1635941 | C | T | 10 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 1691477 | T | C | 13 | 55.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_51 | 23001 | A | G | 22 | 31.77 | CDS | Transition | 0/1 | Protein translocase subunit SecA, chloroplastic (EC 7.4.2.4) |
| Scaffold_51 | 365555 | A | G | 14 | 91.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_51 | 383045 | G | A | 25 | 43.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_51 | 383046 | C | T | 25 | 46.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_51 | 437717 | A | G | 34 | 438.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_51 | 439082 | A | G | 21 | 186.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_51 | 439138 | T | C | 27 | 154.77 | CDS | Transition | 0/1 | Unannotated |