| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_52 | 1596681 | T | C | 12 | 44.77 | CDS | Transition | 0/1 | ATP-dependent helicase BRM (EC 3.6.4.12) (Protein BRAHMA) (AtBRM) (Protein CHROMATIN REMODELING 2) (AtCHR2) |
| Scaffold_52 | 1602244 | A | G | 10 | 98.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_52 | 1602773 | C | T | 21 | 512.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_52 | 1604085 | T | C | 27 | 216.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_52 | 1664192 | T | C | 18 | 403.22 | exon | Transition | 0/1 | Unannotated |
| Scaffold_52 | 1715153 | A | G | 18 | 46.77 | CDS | Transition | 0/1 | 60S ribosomal protein L18a-2 |
| Scaffold_53 | 199146 | A | G | 35 | 35.77 | CDS | Transition | 0/1 | Probable serine/threonine-protein kinase PBL5 (EC 2.7.11.1) (PBS1-like protein 5) (Serine/threonine-protein kinase RLCKVII) |
| Scaffold_53 | 199179 | G | A | 19 | 71.77 | CDS | Transition | 0/1 | Probable serine/threonine-protein kinase PBL5 (EC 2.7.11.1) (PBS1-like protein 5) (Serine/threonine-protein kinase RLCKVII) |
| Scaffold_53 | 282499 | A | G | 11 | 234.88 | CDS | Transition | 0/1 | Polyol transporter 5 (Protein POLYOL TRANSPORTER 5) (AtPLT5) (Sugar-proton symporter PLT5) |
| Scaffold_53 | 932263 | A | G | 50 | 36.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_53 | 972183 | T | C | 19 | 37.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_53 | 1177605 | C | T | 65 | 37.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_53 | 1177669 | A | G | 250 | 5280.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_53 | 1177706 | C | T | 243 | 5740.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_53 | 1177986 | A | G | 80 | 1708.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_53 | 1179886 | T | C | 23 | 394.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_53 | 1240527 | A | G | 47 | 57.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_53 | 1328218 | A | G | 12 | 60.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_53 | 1328249 | T | C | 10 | 104.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_53 | 1328425 | T | C | 13 | 150.77 | CDS | Transition | 0/1 | Unannotated |