| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_56 | 1085260 | G | A | 10 | 187.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_56 | 1085353 | A | G | 10 | 42.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_56 | 1085959 | A | G | 12 | 160.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_56 | 1085979 | G | A | 15 | 136.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_56 | 1161654 | T | C | 21 | 34.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_56 | 1217433 | C | T | 25 | 53.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_56 | 1249847 | T | C | 21 | 40.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_56 | 1291118 | A | G | 13 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_57 | 154696 | T | C | 21 | 37.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_57 | 170484 | C | T | 16 | 36.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_57 | 233276 | C | T | 25 | 34.77 | CDS | Transition | 0/1 | Transcription termination factor MTERF9, chloroplastic (Mitochondrial transcription termination factor 9) (Protein TWIRT1) |
| Scaffold_57 | 595887 | G | A | 10 | 30.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_57 | 858897 | G | A | 22 | 69.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_57 | 863812 | C | T | 12 | 35.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_57 | 934252 | C | T | 23 | 651.94 | CDS | Transition | 1/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_57 | 1090011 | T | C | 14 | 33.77 | exon | Transition | 0/1 | Pectinesterase 1 (PE 1) (EC 3.1.1.11) (Pectin methylesterase) |
| Scaffold_57 | 1525171 | T | C | 15 | 30.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525510 | C | T | 46 | 482.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525564 | G | A | 20 | 307.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525923 | C | T | 19 | 143.77 | CDS | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |