| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_57 | 1527218 | A | G | 24 | 488.77 | CDS | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1527239 | A | G | 26 | 123.77 | CDS | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1527256 | A | G | 32 | 178.77 | CDS | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1527342 | A | G | 10 | 215.77 | CDS | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1528284 | G | A | 11 | 107.77 | CDS | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1688943 | T | C | 10 | 33.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_58 | 297328 | T | C | 18 | 37.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_58 | 753983 | A | G | 12 | 55.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_58 | 1082044 | T | C | 23 | 62.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_58 | 1439437 | G | A | 14 | 435.89 | intron | Transition | 1/1 | Unannotated |
| Scaffold_59 | 124456 | A | G | 19 | 547.28 | exon | Transition | 1/1 | Unannotated |
| Scaffold_59 | 124842 | C | T | 86 | 942.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_59 | 124935 | T | C | 49 | 161.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_59 | 126166 | G | A | 11 | 191.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_59 | 127560 | A | G | 181 | 6086.77 | intron | Transition | 1/1 | Unannotated |
| Scaffold_59 | 128311 | A | G | 151 | 71.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_59 | 128690 | A | G | 250 | 281.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_59 | 128719 | C | T | 250 | 9148.77 | intron | Transition | 1/1 | Unannotated |
| Scaffold_59 | 128897 | G | A | 18 | 31.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_59 | 128898 | A | G | 18 | 31.77 | intron | Transition | 0/1 | Unannotated |