| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_62 | 516297 | C | T | 23 | 94.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_62 | 516559 | T | C | 138 | 2320.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_62 | 517093 | T | C | 98 | 1255.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_62 | 801109 | C | T | 30 | 96.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_62 | 801112 | C | T | 30 | 99.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_62 | 801134 | C | T | 38 | 932.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_62 | 801170 | A | G | 43 | 854.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_62 | 1065435 | A | G | 250 | 1186.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_62 | 1303424 | A | G | 28 | 60.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_62 | 1545370 | A | G | 10 | 30.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_62 | 1566898 | C | T | 250 | 299.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_62 | 1566935 | A | G | 250 | 6511.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_63 | 87440 | A | G | 15 | 55.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_63 | 314231 | T | C | 25 | 44.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_63 | 322230 | T | C | 10 | 138.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_63 | 322886 | C | T | 25 | 551.77 | intron | Transition | 1/1 | Unannotated |
| Scaffold_63 | 478874 | G | A | 26 | 700.81 | intron | Transition | 0/1 | Unannotated |
| Scaffold_63 | 506878 | T | C | 11 | 55.77 | noncoding | Transition | 0/1 | DeSI-like protein At4g17486 (EC 3.4.-.-) |
| Scaffold_63 | 567747 | C | T | 194 | 878.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_63 | 747448 | C | T | 11 | 206.77 | intron | Transition | 0/1 | Unannotated |