| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_63 | 754197 | G | A | 14 | 66.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_63 | 995937 | A | G | 13 | 52.77 | CDS | Transition | 0/1 | Sugar transport protein 13 (Hexose transporter 13) (Multicopy suppressor of snf4 deficiency protein 1) |
| Scaffold_63 | 1122357 | A | G | 16 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_63 | 1313203 | A | G | 21 | 397.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_63 | 1535472 | T | C | 13 | 52.77 | CDS | Transition | 0/1 | Protein CHROMATIN REMODELING 4 (AtCHR4) (EC 3.6.4.-) (Protein PICKLE RELATED 1) |
| Scaffold_63 | 1536067 | T | C | 27 | 34.77 | CDS | Transition | 0/1 | Protein CHROMATIN REMODELING 4 (AtCHR4) (EC 3.6.4.-) (Protein PICKLE RELATED 1) |
| Scaffold_63 | 1644869 | A | G | 10 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_63 | 1686308 | T | C | 29 | 86.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_64 | 39068 | G | A | 13 | 64.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_64 | 43527 | C | T | 18 | 265.77 | intron | Transition | 0/1 | ABC transporter G family member 7 (ABC transporter ABCG.7) (AtABCG7) (White-brown complex homolog protein 7) (AtWBC7) |
| Scaffold_64 | 60157 | A | G | 18 | 42.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_64 | 84725 | T | C | 12 | 147.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_64 | 97440 | T | C | 12 | 32.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_64 | 274455 | G | A | 17 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_64 | 520023 | A | G | 15 | 52.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_64 | 780395 | C | T | 15 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_64 | 963503 | T | C | 14 | 34.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_64 | 1321437 | T | C | 10 | 33.77 | CDS | Transition | 0/1 | Probable serine/threonine-protein kinase At1g54610 (EC 2.7.11.1) |
| Scaffold_65 | 24904 | A | G | 13 | 77.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_65 | 163548 | T | C | 40 | 50.77 | intron | Transition | 0/1 | Unannotated |