| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_72 | 934639 | A | G | 10 | 30.77 | exon | Transition | 0/1 | tRNA-splicing endonuclease subunit Sen2-2 (EC 4.6.1.16) (tRNA-intron endonuclease Sen2-2) (AtSen2) |
| Scaffold_72 | 1176846 | T | C | 38 | 90.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_72 | 1176847 | C | T | 38 | 84.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_73 | 515132 | T | C | 17 | 446.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_73 | 520667 | A | G | 250 | 361.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_73 | 732150 | T | C | 21 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_73 | 806535 | G | A | 27 | 40.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_73 | 854611 | G | A | 18 | 49.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_73 | 863483 | A | G | 17 | 34.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_73 | 1033534 | C | T | 12 | 64.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_73 | 1166466 | C | T | 67 | 167.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_73 | 1166469 | G | A | 65 | 396.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_73 | 1275515 | C | T | 17 | 40.77 | exon | Transition | 0/1 | Cytochrome b561, DM13 and DOMON domain-containing protein At5g54830 (Protein b561A.tha1) |
| Scaffold_74 | 166290 | C | T | 12 | 30.77 | exon | Transition | 0/1 | Receptor-like protein kinase (EC 2.7.11.1) |
| Scaffold_74 | 453017 | T | C | 20 | 43.77 | CDS | Transition | 0/1 | Probable protein phosphatase 2C 73 (AtPP2C73) (EC 3.1.3.16) (AtPPC6;7) |
| Scaffold_74 | 540164 | G | A | 10 | 30.77 | CDS | Transition | 0/1 | Dynamin-related protein 1E (Dynamin-like protein 4) (Dynamin-like protein DLP2) (Dynamin-like protein E) |
| Scaffold_74 | 732450 | G | A | 14 | 36.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_74 | 732675 | A | G | 26 | 31.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_74 | 783056 | T | C | 50 | 78.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_74 | 783129 | A | G | 36 | 191.77 | CDS | Transition | 0/1 | Unannotated |