| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_74 | 783253 | A | G | 37 | 47.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_74 | 895326 | A | G | 21 | 40.77 | CDS | Transition | 0/1 | L-aspartate oxidase, chloroplastic (EC 1.4.3.16) (Protein FLAGELLIN-INSENSITIVE 4) |
| Scaffold_75 | 45444 | A | G | 31 | 56.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_75 | 220848 | A | G | 38 | 54.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_77 | 125764 | C | T | 12 | 98.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_78 | 16366 | A | G | 24 | 105.77 | CDS | Transition | 0/1 | DNA-directed RNA polymerase D subunit 2b (AtNRPD2b) (Nuclear RNA polymerase D 2b) (EC 2.7.7.6) (RNA polymerase IV subunit 2b) (POL IV 2b) |
| Scaffold_78 | 115673 | C | T | 28 | 806.78 | exon | Transition | 1/1 | Unannotated |
| Scaffold_80 | 65335 | T | C | 22 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_80 | 65336 | C | T | 22 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_80 | 192327 | A | G | 23 | 37.77 | exon | Transition | 0/1 | 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 (AtDHNAT1) (DHNA-CoA thioesterase 1) (EC 3.1.2.-) |
| Scaffold_82 | 125570 | T | C | 11 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_82 | 238329 | G | A | 18 | 34.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_82 | 300664 | T | C | 13 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_83 | 15221 | G | A | 20 | 137.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_83 | 15249 | C | T | 25 | 234.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_83 | 15252 | A | G | 24 | 265.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_83 | 15275 | C | T | 23 | 76.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_83 | 140154 | T | C | 24 | 43.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_84 | 95972 | T | C | 34 | 165.77 | CDS | Transition | 0/1 | Endochitinase (EC 3.2.1.14) |
| Scaffold_84 | 205184 | T | C | 13 | 30.77 | exon | Transition | 0/1 | Probable carboxylesterase 11 (AtCXE11) (EC 3.1.1.1) |