| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_85 | 392 | A | G | 12 | 76.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_85 | 199813 | A | G | 14 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_85 | 225174 | T | C | 15 | 54.77 | CDS | Transition | 0/1 | Boron transporter 1 |
| Scaffold_86 | 4363 | C | T | 13 | 289.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_86 | 4703 | A | G | 11 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_86 | 6504 | C | T | 49 | 504.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_86 | 6604 | G | A | 226 | 169.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_86 | 37418 | G | A | 20 | 72.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_87 | 146363 | A | G | 12 | 61.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_87 | 146509 | C | T | 19 | 46.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_87 | 146510 | A | G | 23 | 63.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_88 | 198881 | T | C | 91 | 588.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_88 | 199519 | C | T | 15 | 171.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_88 | 201426 | C | T | 24 | 45.77 | exon | Transition | 0/1 | Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcription subunit 35a) |
| Scaffold_88 | 201441 | A | G | 26 | 563.77 | exon | Transition | 0/1 | Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcription subunit 35a) |
| Scaffold_88 | 201488 | A | G | 43 | 289.77 | exon | Transition | 0/1 | Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcription subunit 35a) |
| Scaffold_88 | 201555 | T | C | 16 | 191.77 | exon | Transition | 0/1 | Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcription subunit 35a) |
| Scaffold_89 | 174799 | A | G | 12 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_90 | 56118 | A | G | 14 | 55.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_90 | 228959 | G | A | 25 | 62.77 | exon | Transition | 0/1 | Unannotated |